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- 1
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Thomas Philip Runarsson and Xin Yao.
Stochastic ranking for constrained evolutionary optimization.
IEEE Transactions on Evolutionary Computation, 4(3):284-294,
Sep 2000.
- 2
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Thomas Philip Runarsson and Xin Yao.
Search biases in constrained evolutionary optimization.
IEEE Transactions on System, Man and Cybernetics - Part C:
Applications and Reviews, 35(2):233-243, May 2005.
- 3
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Hans-Paul Schwefel.
Evolution and Optimum Seeking.
John Wiley & Sons, Inc., New York, NY, USA, 1995.
- 4
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Julio R Banga, Carmen G. Moles, and Antonio A Alonso.
Global optimization of bioprocesses using stochastic and hybrid
methods.
In Floudas and Pardalos [12], pages 45-70.
- 5
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D. Battogtokh, D.K. Asch, M.E. Case, J. Arnold, and H.B. Schüttler.
An ensemble method for identifying regulatory circuits with special
reference to the qa gene cluster of Neurospora crassa.
Proceedings of the National Academy of Sciences,
99(26):16904-16090, Dec 2002.
- 6
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Pedro Mendes and Douglas B. Kell.
Non-linear optimization of biochemical pathways: Applications to
metabolic engineering and parameter estimation.
Bioinformatics, 14(10):869-883, 1998.
- 7
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Petr Kuzmic.
Program dynaift for the analysis of enzyme kinetic data: Application
to hiv proteinase.
Analytical Biochemistry, 237:260-273, 1996.
- 8
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Carmen G. Moles, Pedro Mendes, and Julio R. Banga.
Parameter estimation in biochemical pathways: A comparison of global
optimization methods.
Genome Research, 13:2467-2474, 2003.
- 9
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Julio R Banga, Eva Balsa-Canto, Carmen G Moles, and Antonio A Alonso.
Dynamic optimization of bioreactors: A review.
Proceedings of the Indian National Science Academy,
69A(3&4):257-265, 2003.
- 10
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Scott D. Cohen and Alan C. HindMarsh.
CVODE User Guide.
Lawrence Livermore National Laboratory, Sep 1994.
Numerical Mathematics Group.
- 11
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William Gropp and Ewing Lusk.
Installation and User's Guide to MPICH, a Portable
Implementation of MPI.
Argonine National Laboratory, 1.2.6 edition, Aug 2004.
Mathematics and Computer Science Division; University of Chicago;
http://www-unix.mcs.anl.gov/mpi/mpich/.
- 12
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Christodoulos A. Floudas and Panos M. Pardalos, editors.
Frontiers in Global Optimization, volume 74 of Nonconvex
Optimization and Its Applications, Hingham, MA, USA, 2003. Kluwer Academic
Publishers.
- 13
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Matthew Wall.
GAlib: A C++ Library of Genetic Algorithm Components.
Massachusetts Institute of Technology, 2.4 edition, Aug 1996.
Mechanical Engineering Department.
- 14
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Ben Bornstein.
libsbml Developer's Manual.
The SBML Team, 2.2.0 edition, Oct 2004.
Control and Dynamical Systems, MC 107-81; California Institute of
Technology, Pasadena, CA 91125, USA; http://www.sbml.org/.
- 15
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Tobias Oetiker, Hubert Partl, Irene Hyna, and Elisabeth Schlegl.
The Not So Short Introduction to LATEX2e Or LATEX2ein
131 minutes, 4.14 edition, Apr 2004.
- 16
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W. Richar Stevens.
Advanced Programming in the UNIX(R) Environment.
Addison-Wesley, Reading, Massachusetts, 1992.
- 17
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William H. Press, Brian P. Flannery, Saul A. Teukolsky, and William T.
Vetterling.
Numerical Recipes in C: The Art of Scientific Computing.
Cambridge University Press, 1992.
- 18
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William H. Press, Brian P. Flannery, Saul A. Teukolsky, and William T.
Vetterling.
Chapter 16: Integration of Ordinary Differential Equations,
pages 707-752.
In [17], 1992.
- 19
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William H. Press, Brian P. Flannery, Saul A. Teukolsky, and William T.
Vetterling.
Chapter 7: Random Numbers, pages 274-328.
In [17], 1992.
Xinglai Ji
2005-06-29